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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | 28582.m000318 | ||||||||
| Common Name | RCOM_0277920 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 534aa MW: 59028.2 Da PI: 7.8864 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 97.7 | 8.2e-31 | 171 | 225 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r+rW+ eLHe+F+++v++LGG+ekAtPktil++m+ kgLt+ hvkSHLQkYR
28582.m000318 171 KNRMRWSRELHEKFINCVDNLGGAEKATPKTILKMMESKGLTIFHVKSHLQKYRA 225
78****************************************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 10.823 | 168 | 228 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 6.2E-27 | 169 | 225 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.33E-15 | 169 | 224 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.4E-22 | 171 | 226 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.3E-8 | 173 | 224 | IPR001005 | SANT/Myb domain |
| SMART | SM00360 | 0.0079 | 246 | 339 | IPR000504 | RNA recognition motif domain |
| SuperFamily | SSF54928 | 3.66E-12 | 282 | 343 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| Gene3D | G3DSA:3.30.70.330 | 1.2E-10 | 282 | 341 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| PROSITE profile | PS50102 | 9.183 | 282 | 357 | IPR000504 | RNA recognition motif domain |
| Pfam | PF00076 | 1.8E-7 | 282 | 334 | IPR000504 | RNA recognition motif domain |
| Gene3D | G3DSA:3.30.70.330 | 3.7E-23 | 351 | 436 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| SuperFamily | SSF54928 | 5.91E-24 | 355 | 438 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| PROSITE profile | PS50102 | 17.302 | 357 | 434 | IPR000504 | RNA recognition motif domain |
| SMART | SM00360 | 7.3E-24 | 358 | 430 | IPR000504 | RNA recognition motif domain |
| Pfam | PF00076 | 7.5E-16 | 359 | 426 | IPR000504 | RNA recognition motif domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0000166 | Molecular Function | nucleotide binding | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 534 aa Download sequence Send to blast |
MEGGSKCQKL GPHMLSMSDL DQLASAVYAT EKHDGEYGIA SHLSSQAPEA NTLPPIESSG 60 VEIVTESNLQ TILKLLFCSN QHHKSCEMSQ KSLFSIESRG NDHFLSHDNI KLLTANPNLI 120 GTHLQFPSIP QNNPELIPPS EREKSSLRDL EVASFTCSSS SAYSRPRHSR KNRMRWSREL 180 HEKFINCVDN LGGAEKATPK TILKMMESKG LTIFHVKSHL QKYRAEKYMS ERKQGETERT 240 SSDVPLLYME NIMQIKETLQ LQLDFQKQLN EQLEGPDPHM FLAQAFRVHG EIEEGAVIYD 300 KATGKSRGYG FITYKHMEST QIALRAPSKL IDGRLAVCNL ACEGLTGAST TPDLAQRKLY 360 IGGLSPEITS EMLLNFFGRH GEIEEGSVAY DKDTNESRGF GFVTYKTVEA AKKAIDDPQK 420 VLGGRSIIVK LADTHKGKTV QTQMPASVAP VPLLMTAGYT QPGKAHPGPA PVGYSYPQTM 480 PSYPASSYPS PPTAPAPYPL QSQYQYPPVA MKKEPFGPPA PMGMGGYPYY LPKQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4r_A | 2e-20 | 171 | 228 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-20 | 171 | 228 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-20 | 171 | 228 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-20 | 171 | 228 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 28582.m000318 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002530353.2 | 0.0 | uncharacterized protein LOC8263213 | ||||
| TrEMBL | B9SWI5 | 0.0 | B9SWI5_RICCO; Uncharacterized protein | ||||
| STRING | XP_002530354.1 | 0.0 | (Ricinus communis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF10834 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06800.2 | 2e-35 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | 28582.m000318 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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