PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28567.m000052
Common NameLOC8262041, RCOM_0275800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 469aa    MW: 51675.4 Da    PI: 5.2652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28567.m000052genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-12266313254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +++  + Er+RR+++N+++  L+ l+P++     +K +  +++  A++YIk+L
  28567.m000052 266 KTKPFATERQRRQHLNDKYKALQNLVPNP-----TKADRTSVVGDAIDYIKEL 313
                    6777899**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-12263322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.82E-15264331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.843264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-11265317No hitNo description
PfamPF000101.9E-9266313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-11270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MYEETGCFDP NSMVEGADDG LCQVLQIPPQ PQPLMAGSTT NSHNSYEENL KLSADQELSY  60
HHSNNPHHHH QEDDASASAA AAMETQLQNH QMGFDTHLMQ DSSNQVMAFN SSTSLQDATF  120
AQTPDLLNLF HLPRGSTSSL LPNSSISFTN PSHTAPLGFV GDLPMADTAS ASSILYDPLF  180
HLNLPPQPPL FRDLFQSLPP HGYSLPGSMV NSLFGAGVGG DDHVEGSGDG GGIYQDGDGE  240
QQFDNGVLDF TWDMPCMGKG RDAGKKTKPF ATERQRRQHL NDKYKALQNL VPNPTKADRT  300
SVVGDAIDYI KELLRTVNEL KLLVEKKRCA RERSKRQKTE EDSIGNGHDS SCITKPLGDP  360
DQSFNNGSLR SSWIERKSKD TEVDVRIIDD EVTIKLVQRK KINCLLFVSK VLDELQLDLH  420
HVAGGHIGDY YSFLFNTKIF EGSSVYASAI ANKLIEVVDR HYASTPSTN
Cis-element ? help Back to Top
SourceLink
PlantRegMap28567.m000052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534354.10.0transcription factor bHLH91
TrEMBLB9T7Y50.0B9T7Y5_RICCO; Transcription factor ICE1, putative
STRINGXP_002534354.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-105bHLH family protein