PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28448.m000355
Common NameRCOM_0248590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 69aa    MW: 7803.15 Da    PI: 9.8365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28448.m000355genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101442129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+WT+eEd++l+ +++++G g+W + ++
    28448.m000355 14 KGPWTPEEDQKLLAYIEEHGHGSWQALPA 42
                     79**********************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-13543IPR009057Homeodomain-like
PROSITE profilePS500907.271940IPR017877Myb-like domain
SuperFamilySSF466892.21E-91143IPR009057Homeodomain-like
SMARTSM007170.00821369IPR001005SANT/Myb domain
PfamPF002493.1E-91442IPR001005SANT/Myb domain
CDDcd001672.17E-61643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MVRSPCCGKG GLKKGPWTPE EDQKLLAYIE EHGHGSWQAL PAKAAINIVF DFVKKNETLR  60
LSFIHLRIK
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28448.m000355
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580863.15e-25transcription factor MYB106
SwissprotQ9LE631e-21MY106_ARATH; Transcription factor MYB106
TrEMBLB9ST402e-44B9ST40_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002529159.13e-45(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.22e-19myb domain protein 16