PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28405.m000015
Common NameRCOM_0242980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 119aa    MW: 13372.5 Da    PI: 9.5026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28405.m000015genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-0513521054
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  28405.m000015 13 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMEYIRFL 52
                   6788889999999****9999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-10365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.636352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-4958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-12966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-51357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
TKRHKADLSI STKERKEKLG ERIVALQQLV SPYGKTDTAS VLLEAMEYIR FLHEQVKVLS  60
APYLQGAPTT QMQELEQYSL RNRGLCLVPI TCTIGVDRSN GADIWAPIKN TSPKFEKAI
Cis-element ? help Back to Top
SourceLink
PlantRegMap28405.m000015
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534538.25e-84transcription factor bHLH153, partial
SwissprotQ7XJU25e-60BH153_ARATH; Transcription factor bHLH153
TrEMBLB9T8G93e-83B9T8G9_RICCO; Transcription factor, putative (Fragment)
STRINGXP_002534538.14e-84(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-62bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]