PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28320.m001098
Common NameLOC8275851, RCOM_0221060
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 341aa    MW: 38416.3 Da    PI: 8.2612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28320.m001098genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.6e-0983108127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+ C  f   G C+ G++C+FaHg+
  28320.m001098  83 FKTRMCAKFKT-GSCRNGENCNFAHGM 108
                    69*******99.*************95 PP
2zf-CCCH29.11.6e-09146169225
                    -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                    k++lC+ f+ + +C+yGdrC+F H
  28320.m001098 146 KMKLCKKFYNGEQCPYGDRCNFLH 169
                    789*******66************ PP
3zf-CCCH42.11.5e-13230256127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+lC  +  tG+C++G++C+FaHg+
  28320.m001098 230 WKTKLCTKWETTGQCPFGEKCHFAHGQ 256
                    8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-1478115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-880113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1482109IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-482108IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-583108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-7144171IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4144171IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-10146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-17226261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10228260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535229257IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6229256IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-11230256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSYSESQPPF MSPQPTYQSG SDAIGIWPQF PMNSNEQFDP QFDHHQPPFK RPRNSEDNNQ  60
SMNYRMPPPN NLPINKGTTN IFFKTRMCAK FKTGSCRNGE NCNFAHGMQD MRQPPPNWQE  120
LVGVVVRGEE DRPAGNWDDD QRIIHKMKLC KKFYNGEQCP YGDRCNFLHE DPSKFRDDAG  180
RFRESSAISI GTTAPPMMHG SGGLSVVEVN KPVNNAGADA YRGNMKPVYW KTKLCTKWET  240
TGQCPFGEKC HFAHGQAELQ IPNGRAEGEV GNAGSILTKP PPILVTNGSP SMTASVPSLV  300
EERQGKKCFL KWKGFKKINR IYGDWLDDLP LVHNLTNQVE S
Cis-element ? help Back to Top
SourceLink
PlantRegMap28320.m001098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524459.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-100C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLB9SEP00.0B9SEP0_RICCO; Uncharacterized protein
STRINGXP_002524459.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-94C3H family protein