PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28288.m000014
Common NameLOC8279950, RCOM_0213970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 307aa    MW: 34641.9 Da    PI: 9.1491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28288.m000014genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a +++ ++   +W ++a+ ++ g+t  +++  ++ 
    28288.m000014 28 KWTPEENKRFENALALFDKDepdRWQKVAALIP-GKTVGDVIKQYRE 73
                     8********************************.******9999986 PP
2Myb_DNA-binding46.86.7e-15138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
    28288.m000014 138 PWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKY 182
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-42274IPR009057Homeodomain-like
PROSITE profilePS512939.952479IPR017884SANT domain
SMARTSM007172.3E-92577IPR001005SANT/Myb domain
SuperFamilySSF466893.31E-112781IPR009057Homeodomain-like
CDDcd001671.16E-72874No hitNo description
PfamPF002494.0E-82873IPR001005SANT/Myb domain
PROSITE profilePS5129419.898131187IPR017930Myb domain
SuperFamilySSF466898.97E-18132187IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-18134186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-13135181IPR009057Homeodomain-like
SMARTSM007173.9E-13135185IPR001005SANT/Myb domain
PfamPF002491.7E-12138182IPR001005SANT/Myb domain
CDDcd001676.96E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MNQGLEILSP ASYLENSNWL FQESRGTKWT PEENKRFENA LALFDKDEPD RWQKVAALIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YSSSSDSFTL EWVNGNQGYD GFKQYYTPGG  120
KRTTATRPSE QERKKGVPWT EEEHRQFLMG LQKYGKGDWR NISRNFVTTR TPTQVASHAQ  180
KYFIRQSTGG KDKRRSSIHD ITTVNLPDTK SPSPESKKPS SPDHCITTMQ SPKMVGVAKG  240
LLDWKPQNEG AAAVFNPTNG NLLMSPLCGI SSYGPKLQEQ NLLRGTLPGY QFGPYNLIFQ  300
MQPMQRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-142694876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28288.m000014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534707.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-120DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9T8Y80.0B9T8Y8_RICCO; DNA binding protein, putative
STRINGXP_002534707.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-128MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]