PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28179.m000479 | ||||||||
Common Name | RCOM_0189200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 33216 Da PI: 8.0652 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 178 | 224 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq 28179.m000479 178 DHVIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKHLQ 224 6999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.18 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 178 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-10 | 178 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-17 | 179 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.84E-14 | 179 | 228 | No hit | No description |
SMART | SM00353 | 5.0E-15 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEIPSAKWLS ELGMEDASFN YQYQINTLDY SIDDVDFQSP SSESYSLNDQ IFNPQSVQNM 60 SCAPSNIDQR PAKQLKTNSW RSCTTDQITS SKASPSSSSH IISFDNTNSS PATSPHFYGL 120 DSTTVKPKTE IGPNGKVNHD PSSLFGLGSF EDQYGSTYYN QGTKKAGAST RSPLHAQDHV 180 IAERKRREKL SQRFIALSAV VPGLKKMDKA SVLGDAIKYL KHLQERVKTL EEQAAKKTME 240 SVVFVKKSQV YADDDSSSID ENFVGSCDHP LPEIEARVQT RISSLKSIVK SRKVAYSKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 6e-14 | 178 | 233 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 187 | ERKRRE |
2 | 183 | 188 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28179.m000479 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528912.3 | 0.0 | LOW QUALITY PROTEIN: transcription factor bHLH18-like | ||||
TrEMBL | B9SSE3 | 0.0 | B9SSE3_RICCO; DNA binding protein, putative | ||||
STRING | XP_002528912.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 28179.m000479 |