PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28179.m000479
Common NameRCOM_0189200
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 299aa    MW: 33216 Da    PI: 8.0652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28179.m000479genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12178224455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  28179.m000479 178 DHVIAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKHLQ 224
                    6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10178224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-17179238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.84E-14179228No hitNo description
SMARTSM003535.0E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEIPSAKWLS ELGMEDASFN YQYQINTLDY SIDDVDFQSP SSESYSLNDQ IFNPQSVQNM  60
SCAPSNIDQR PAKQLKTNSW RSCTTDQITS SKASPSSSSH IISFDNTNSS PATSPHFYGL  120
DSTTVKPKTE IGPNGKVNHD PSSLFGLGSF EDQYGSTYYN QGTKKAGAST RSPLHAQDHV  180
IAERKRREKL SQRFIALSAV VPGLKKMDKA SVLGDAIKYL KHLQERVKTL EEQAAKKTME  240
SVVFVKKSQV YADDDSSSID ENFVGSCDHP LPEIEARVQT RISSLKSIVK SRKVAYSKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14178233863Transcription factor MYC2
5gnj_B6e-14178233863Transcription factor MYC2
5gnj_E6e-14178233863Transcription factor MYC2
5gnj_F6e-14178233863Transcription factor MYC2
5gnj_G6e-14178233863Transcription factor MYC2
5gnj_I6e-14178233863Transcription factor MYC2
5gnj_M6e-14178233863Transcription factor MYC2
5gnj_N6e-14178233863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap28179.m000479
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528912.30.0LOW QUALITY PROTEIN: transcription factor bHLH18-like
TrEMBLB9SSE30.0B9SSE3_RICCO; DNA binding protein, putative
STRINGXP_002528912.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-43bHLH family protein