PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28179.m000478
Common NameLOC8288726, RCOM_0188790
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 331aa    MW: 36857.7 Da    PI: 8.4565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28179.m000478genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11155201455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++++k+Lq
  28179.m000478 155 DHILAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKHVKQLQ 201
                    5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-11156205No hitNo description
SMARTSM003532.6E-14157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVTALGDELQ PSFSSDSNSS YPVFTAKSTA TAAAAGTTLS SYFIETSQTS YERPSKLHKT  60
NSWNSDITTE DQSAKPSSTS QLLSFETPKV SSPVNSQRFY MKPKDEAASP RNMHFQPVIS  120
RPPYDIQNHD IKTIQGITNN KRPYSVTRTA SHAQDHILAE RKRREKLSQR FIALSALVPG  180
LKKMDKASVL GDAIKHVKQL QERVKMLEDQ TKKRTMESII LIKKSQLSAD DESSSCDDNS  240
DGCSDSALPE IEARVSDKDV LFRIHCEKQQ GVVPKILHEV ENLHLSIINN TVLPFGSSTL  300
DITIIAQMDE NNSMAVKDLV KNLRVALLKF M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap28179.m000478
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014842.10.0transcription factor bHLH18
SwissprotQ9T0721e-69BH025_ARATH; Transcription factor bHLH25
TrEMBLB9SSE20.0B9SSE2_RICCO; DNA binding protein, putative
STRINGXP_002528911.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.24e-65bHLH family protein