PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28147.m000025

Common Name

LOC8278136, RCOM_0173590

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 155aa MW: 17309.9 Da PI: 9.1892

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28147.m000025	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H 28147.m000025 47 FSCNYCQRKFYSSQALGGHQNAH 69 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.57E-6	44	74	No hit	No description
PROSITE profile	PS50157	11.094	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDFQPNTSLH LSLPNNNNSN QLNLELVLEP SSSSSSSPHS PAEPRVFSCN YCQRKFYSSQ 60 ALGGHQNAHK LERTLAKKSR ELSSAVRAHG GKSGSSSTSG LNHVRRNQPG FEHHGHGGRF 120 IDDMSYGRRD SWSMGYRPEN VQDEFNNQLD LSLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28147.m000025

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002534087.1	1e-111	zinc finger protein 2
Swissprot	Q39261	4e-35	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	B9T768	1e-110	B9T768_RICCO; Zinc finger protein, putative
STRING	XP_002534087.1	1e-110	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9619	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	6e-25	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	28147.m000025
Entrez Gene	8278136