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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28117.m000016 | ||||||||
Common Name | RCOM_0168350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 13633 Da PI: 4.1738 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 1e-10 | 17 | 46 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd +l++ ++ +G ++WktIa + 28117.m000016 17 KGAWTAEEDRKLAQFIEVHGAKRWKTIATK 46 79**************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.526 | 12 | 55 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.17E-8 | 13 | 46 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 16 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-8 | 17 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-6 | 19 | 44 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MAPKKSSEAS TKIVMNKGAW TAEEDRKLAQ FIEVHGAKRW KTIATKAEEA PEPARPQEAN 60 PQKSNDTAAQ VMEENTEEGL AIPELNFDDT DLFDFSAEGS YGLDWVNKFL ELDEDAWLAD 120 KS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28117.m000016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015584118.1 | 4e-48 | transcription factor MYB114 | ||||
TrEMBL | B9T9W4 | 5e-83 | B9T9W4_RICCO; Uncharacterized protein | ||||
STRING | XP_002535033.1 | 8e-84 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32766 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-06 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | 28117.m000016 |