PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28052.m000040
Common NameRCOM_0150170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 358aa    MW: 38840.4 Da    PI: 6.1227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28052.m000040genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161464148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++      +Rt++++k++w+++l
    28052.m000040 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAAthlPKRTDNEIKNYWNTHL 64
                     79********************888887766666669***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-23572IPR009057Homeodomain-like
SuperFamilySSF466892.94E-16874IPR009057Homeodomain-like
PROSITE profilePS5129422.825968IPR017930Myb domain
SMARTSM007176.0E-151366IPR001005SANT/Myb domain
PfamPF002498.5E-151464IPR001005SANT/Myb domain
CDDcd001679.85E-151664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAATHLPK RTDNEIKNYW  60
NTHLKKRLAK MGIDPVTHKP KNDALLSSDG QSKNAANLSH MAQWESARLE AEARLVRESK  120
LRSHSFQHQL SSTGYVPASG SGSASSQPQR PLDVIKGCWN GGWSKSTDGN NNGGNGLNTG  180
IGCDLESPTS TLTYSENAPP VLNSSGIGGD NSIPMIELVG TTSGSSETGI VKEEGENQDW  240
KILGNSSHDH HQHLPPDNSV SFTSSHHHDM TISMEGPWTP ESLRLSTSSH IHADHVMEEG  300
FTNLLLNDST DRSLSDSGKE SDNSGGSGNG SDYYEDNKNY WNSILNLVNS SPSDSPMF
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28052.m000040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049627e-35AP004962.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28H14, TM0141, complete sequence.
GenBankJF7549277e-35JF754927.1 Lotus japonicus MIXTA-like transcription factor (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583755.10.0transcription factor MYB106
SwissprotQ9LXF12e-82MYB16_ARATH; Transcription factor MYB16
TrEMBLB9T6W70.0B9T6W7_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002533986.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-72myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]