PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28035.m000360
Common NameRCOM_0146500
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 475aa    MW: 53153.4 Da    PI: 9.1941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28035.m000360genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05312334123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+Cp+C  +Fs + ++  H+ tH
  28035.m000360 312 YTCPKCRNVFSVSQTFAAHMLTH 334
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-4300336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.05E-6300336No hitNo description
PROSITE profilePS501579.619312339IPR007087Zinc finger, C2H2
PROSITE patternPS000280314334IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAGNLNSFNP NSLDFGLIND AMDHFLLSLN SNLDQNNVNG STFINSQLFG SNSIISVHQN  60
NPTPQADHAR VSHGQLGLSQ RLSEVRRTYV APHRVQVHSF IDYFPVQQQN QSICPQHEVT  120
VTEIVRTTKF LTSTPKMEPL FTPNDIFHPH DQHNFQNHGL PISNILNHHS LIKSEPFYSP  180
YPSLESNKNQ MMNTYDGDMN GDLVQPLALT GQEHTNHLMM PKSPVQQFPH RHTNPPAINL  240
HEIKVESDTN GNLLSHRKRA DHMMTVKYLI QQLRRTHPNA SNLQTNTADM GSSDTEDDGR  300
THSLPHEKYG PYTCPKCRNV FSVSQTFAAH MLTHYKNESS DQRKKRLAAK YKRKNLRLVY  360
RRGGMTLLPE SSKARGKSVN MVDNSNVRNE VQEGQGNAEA TTSNFPVNSM IKGQGNAEAT  420
TSIFPVNSMI KGQGNAEATT SIFPVNSMIK GQGNAEATTG NFPVNSRIKQ EPTTI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28035.m000360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SQ560.0B9SQ56_RICCO; Uncharacterized protein
STRINGXP_002528125.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1894066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.15e-19C2H2-like zinc finger protein