PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27999
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HB-other
Protein Properties Length: 363aa    MW: 40055.3 Da    PI: 4.6684
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27999genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-092993312254
               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               ++ p+++e+e+LA+++gLt++qV  WF N Ra+
     27999 299 KPIPTRAEKEDLARQTGLTTTQVGDWFVNARAR 331
               577*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0021268339IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-19272338IPR009057Homeodomain-like
SuperFamilySSF466891.45E-11277339IPR009057Homeodomain-like
PROSITE profilePS5007110.916287335IPR001356Homeobox domain
PfamPF059201.6E-10299331IPR008422Homeobox KN domain
CDDcd000861.48E-8302335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAFSPTARAT PDGLDLVLFD VDDDDGGFDF SDHGETGTDD VPFDADAWDD VLNAFDAYRE  60
DASAFDVDAF GCAAWPDLDG EAKDDDDFDG YDASRRNAAK AVREHVASAL RDALSACESE  120
LSWASDEGEW ETKRREAEDA AKAIKYVRSR VYARLRALGA STDTATTNRL KMLRDMFVAE  180
LRTFAARADA LERRAAETLV SKNLCLNLPD PKLMLKKKFN TTLTSVLDSF DAAFEHVVAK  240
AKTPSTKARA AASRQSEQNS GNSNAVEQQT AQGRHETHAK KILSAWLWDH FYPTDERLKP  300
IPTRAEKEDL ARQTGLTTTQ VGDWFVNARA RLWKPYIEGL IRGVYNDATV KKALDLQAEA  360
AA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005960.0CP000596.1 Ostreococcus lucimarinus CCE9901 chromosome 16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421834.10.0predicted protein
TrEMBLA4S8X40.0A4S8X4_OSTLU; Uncharacterized protein
STRINGABP001280.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP722266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-16BEL1-like homeodomain 11