PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27996.m000153
Common NameLOC8287904, RCOM_0140320
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 288aa    MW: 32570.5 Da    PI: 4.2156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27996.m000153genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08167211655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +++ r RR++i ++ +eL +l+P  +      K++ ae+L+ A +Y+k Lq
  27996.m000153 167 SIAARERRRKITERTQELGKLIPGgN------KMNTAEMLQSASNYVKFLQ 211
                    67889******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.805161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-11164219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-12164221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-9164214No hitNo description
SMARTSM003531.8E-10167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6167211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MALSFCPSFE YQQQGYLPLY PQTETDMAAE LLGWHDDNFS TFSDCFVDPL FGFDEMFYSD  60
TYTSLLPYFS SPSDDLISLS PEIFPLQEVE SYQYPKREKI YSDDCQSNFV PAFSDGYVAS  120
SVPVPDFTPE IPASLPKFET PLSSFSVGRS ESSCVKKPNG GSLSAQSIAA RERRRKITER  180
TQELGKLIPG GNKMNTAEML QSASNYVKFL QAQVGILELM ESTQERKEDL HRNELQVLLV  240
SSAIQEKLYS QEKCLVPREF LETMANDHEI QSTPFIIDEI DRLLGINS
Cis-element ? help Back to Top
SourceLink
PlantRegMap27996.m000153
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533773.10.0transcription factor bHLH52
TrEMBLB9T6A40.0B9T6A4_RICCO; DNA binding protein, putative
STRINGXP_002533773.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-38bHLH family protein