PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27996.m000145
Common NameRCOM_0139840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 466aa    MW: 50616.3 Da    PI: 5.4262
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27996.m000145genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31243301259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  27996.m000145 243 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 301
                    699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109237303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-31239303IPR003657WRKY domain
SuperFamilySSF1182903.14E-26240303IPR003657WRKY domain
SMARTSM007741.4E-37242302IPR003657WRKY domain
PfamPF031061.0E-25244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDNYQGDLTD ILRASGTSTG GALGQSDGPA AALSNWEFNC DPLGNLSSAS ALEDNSSSSR  60
DNDNNNNDNN NVFGDPFINM RDPLLHELNN VVASGCSAYF CSTNSTDHLL STTAGTSIDD  120
ACNFPGANSR SSHHHHKVFE EEINNNNNSN NSPCNIFSRI QISQNNSAAK LPVSPCDSPV  180
IAAAVSPRGF KASPMMQISS PRNLGIKRSV CIYHIRKSQA KKVVCIPAPA AANSRPSGEV  240
VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRTDPNML VITYTSEHNH  300
PWPTQRNALA GSTRSQPPKN NAGSSKSSPT SHPQKTTLNT KEQKESSNDT FSPSNMVAAA  360
SASVKEEIED IHEKHIMEME DADQFSSDGF PQSSSYRPTM PDSSQSEDFF ADLGEIEADP  420
LDLLFSQGGF SGDHEQKGSK GLDPFGLFDW SEDTNNISFE EAKRDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25217304280Disease resistance protein RRS1
5w3x_D2e-25217304280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27996.m000145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583599.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 14
TrEMBLB9T6960.0B9T696_RICCO; WRKY transcription factor, putative
STRINGXP_002533765.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.17e-92WRKY DNA-binding protein 14