PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27964.m000356 | ||||||||
Common Name | RCOM_0130980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 32178.2 Da PI: 5.721 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 109 | 154 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L 27964.m000356 109 KHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINDL 154 799***********************6.....4****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.231 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-18 | 105 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.28E-13 | 108 | 158 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-16 | 109 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 109 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-15 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MIRENWGLVQ QAKSLFGSDM MPNNPNPPIQ LLGMNISFAD MGIISGIQEG DTTHANEKPQ 60 ENDEKKESNN VDSEHSDSDF SLFAAASLEK KSPKKRGRKP ALGGDKALKH VEAERQRREK 120 LNHRFYALRA VVPNVSRMDK ASLLSDAVSY INDLKAKIDE LESQLHIDSS KTVKLEVADT 180 KDNQSTTTTS DDQAASRPIS SVSTTNGFPL EVEVKSLGND AMIRVQSENV NYPAARLMTA 240 LRELEFQVHR VTMSTVNELM LQDVVVRVPD GLRTEEDIKT VIFRRLEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
5gnj_B | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
5gnj_E | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
5gnj_F | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
5gnj_G | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
5gnj_I | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
5gnj_M | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
5gnj_N | 5e-26 | 102 | 178 | 1 | 79 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27964.m000356 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002529965.1 | 1e-166 | transcription factor MYC2 | ||||
TrEMBL | B9SVE9 | 0.0 | B9SVE9_RICCO; Transcription factor, putative | ||||
STRING | XP_002529968.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 6e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 27964.m000356 |