PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27930
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 300aa    MW: 30166.2 Da    PI: 8.074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27930genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.5e-08264284526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +C ff+r G C+ Gd+Ck++H+
    27930 264 PCIFFQR-GACRAGDSCKYSHS 284
              7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.324259286IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4260285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6260284IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6264284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4264284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNADEMIADG DANGVDVRAL DEAMAMDDDH ASARKSASSA PANANPPLPP NARPRHEGRG  60
GANGHGGERR RGGGERGGGR GGGRFQQRER APTRPGWFAT GEVDEHSGRP AHSGQCEGCR  120
VSTVVNFRPV VGGNPPLCGV CLDSLKAATA GGSVDGDNAS GGPNRGRRGG RNGAMMMMGM  180
PHQGGFQGGA RFSPYASGGQ MVMIDPRMMA AYGGGRGGGM MAAYGAAGAG GGGGRGKNRT  240
WTREGGDAGA GVGGQEDVDT SGIPCIFFQR GACRAGDSCK YSHSGEGSGA APAEMNVEM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583RGGGRGGGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005950.0CP000595.1 Ostreococcus lucimarinus CCE9901 chromosome 15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421668.10.0predicted protein
TrEMBLA4S8Q30.0A4S8Q3_OSTLU; Uncharacterized protein
STRINGABO999610.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP647955