PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27843.m000162
Common NameLOC8280426, RCOM_0098280
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 295aa    MW: 31031.2 Da    PI: 9.8708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27843.m000162genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063558225
                   -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                   k ++C  f+ t  C++G++C+F H
  27843.m000162 35 KSKPCTKFFSTAGCPFGESCHFLH 58
                   7789******************** PP
2zf-CCCH27.94e-09101126227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    k +lC+ +     Ck+Gd+C+FaHg+
  27843.m000162 101 KSRLCNKYNTAEGCKFGDKCNFAHGE 126
                    679*********************96 PP
3zf-CCCH31.72.6e-10262286126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC +f++ G C +G rC+FaHg
  27843.m000162 262 FKTKLCENFSK-GSCTFGQRCHFAHG 286
                    69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-63459IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-83558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-1397131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-798130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.36699127IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6101126IPR000571Zinc finger, CCCH-type
SMARTSM003560.016101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.51E-15158239IPR004088K Homology domain, type 1
SMARTSM003224.5E-13167237IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.8E-16167237IPR004088K Homology domain, type 1
PROSITE profilePS5008414.697168232IPR004088K Homology domain, type 1
PfamPF000131.6E-11170234IPR004088K Homology domain, type 1
CDDcd001052.28E-14170232No hitNo description
Gene3DG3DSA:4.10.1000.107.9E-15258292IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5261287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8261291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685261288IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-8262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMDIRKRGRN DFNVNGGFKK SRKEMDSFST GVGSKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNAVAQM MNLGPAVTSI PRNMPAPSPA IPNGSAPSAV KSRLCNKYNT AEGCKFGDKC  120
NFAHGEWELG KPVVPSHDDP RAFGTIPGRM GGRMEPPPPG SAASFGASAT AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHETD PNVRNIEFEG SFEQIKQASA MVSELIASIS  240
SANASAKATG LIGGHGHPGS NFKTKLCENF SKGSCTFGQR CHFAHGAAEL RKSGV
Cis-element ? help Back to Top
SourceLink
PlantRegMap27843.m000162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533458.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9T5D90.0B9T5D9_RICCO; Uncharacterized protein
STRINGXP_002533458.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-49C3H family protein