PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27810.m000634
Common NameLOC8278944, RCOM_0089240
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 728aa    MW: 79310 Da    PI: 6.4091
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27810.m000634genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  27810.m000634 306 PCPDFRK-GACRRGDMCEYAHG 326
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.9E-1738181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.2E-1645180IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-883155IPR020683Ankyrin repeat-containing domain
CDDcd002048.69E-1586165No hitNo description
PROSITE profilePS5029717.87387194IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001387117IPR002110Ankyrin repeat
PRINTSPR014157.6E-588103IPR002110Ankyrin repeat
PROSITE profilePS5008810.98122157IPR002110Ankyrin repeat
SMARTSM002480.0029122154IPR002110Ankyrin repeat
PRINTSPR014157.6E-5141155IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035649336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MCCGLERLKP TPFPTLLLIS SEDSRSTNID MNHLTVETED TFASLLELAA NNDIEGFKRT  60
IERDPSCVDE IGLWYGRRKG SKQMVNEHRT PLMVAATYGS IDVIKLILSS SDADVNRSCG  120
LDKSTALHCV ASGGAVNAVD VVKLLLAAGA DPNSIDANGH RPIDVIVVPP KLDGVKFALE  180
ELLVNDGSVI ERDLRVSTAT SNSTSPPLSP SVGNGSPLSS SDSPVKSKLH DATISTASEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTVE  360
ELRPLYVSTG SAVPSPRSST SGATAMDFAA AMSLLPGSPS SVSVMSPTPF TPPMSPSANS  420
MSHSSVAWPQ PNVPALHLPG SNLQSSRLRS SLNARDIQAD DYSMLPDFDV QQQQLLNELS  480
SLTQPALSNN SLNRSGRLKL TPSNLDDLFS AESSSPRYAD QALASAVFSP THKSAVLNQF  540
QQQQSMLSPI NTNFSPKNVD HPLLQASFAS GRMSPRNVEP ISPMSSRMTM LAQREKQQQQ  600
LRSLSSRELG SNSAAIVGSP VNSWSKWGSS NGKPDWTVSS DEFGKLRRSN SFELGNGEEP  660
DLSWVQSLVK ESPTEMKEKL TMPVSTSVAM GASSCESSNV NSQIDSVDHV VGAWIEQLQI  720
DQLVAQQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582GRRKGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap27810.m000634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526718.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_015579394.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_015579395.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9SL490.0B9SL49_RICCO; Nucleic acid binding protein, putative
STRINGXP_002526718.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]