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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27782.m000013 | ||||||||
Common Name | RCOM_0083040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 55aa MW: 6429.55 Da PI: 10.6251 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4e-10 | 25 | 53 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+W+++Ed++l+d++k +G g+W++ ++ 27782.m000013 25 KGAWSKQEDQKLIDYIKIHGEGCWRSLPK 53 79**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-12 | 16 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.984 | 20 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-7 | 20 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-8 | 25 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.63E-5 | 27 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
ERKKLTKKAR KKMRKPCCDK EGNNKGAWSK QEDQKLIDYI KIHGEGCWRS LPKAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 14 | KKARKKMRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27782.m000013 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034675 | 3e-42 | KM034675.1 Jatropha curcas clone JcMYB055 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534714.2 | 3e-24 | transcription factor MYB8 | ||||
Refseq | XP_012491251.1 | 4e-24 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_016701608.1 | 4e-24 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_017629510.1 | 4e-24 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | P81395 | 4e-17 | MYB30_ANTMA; Myb-related protein 330 | ||||
Swissprot | Q38851 | 3e-17 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | B9T8Z5 | 2e-31 | B9T8Z5_RICCO; R2r3-myb transcription factor, putative (Fragment) | ||||
STRING | XP_002534714.1 | 3e-32 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-18 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | 27782.m000013 |
Publications ? help Back to Top | |||
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