PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27763.m000042
Common NameRCOM_0077190
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 241aa    MW: 27956.3 Da    PI: 8.818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27763.m000042genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++v+q+G g W+ ++ + g++R++k+c++rw++yl
    27763.m000042  9 KGAWTSEEDDLLRKCVEQYGEGKWHQVPLRTGLNRCRKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding51.62.1e-1662107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++++
    27763.m000042  62 RGHFTADEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHR 107
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.641460IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-22659IPR009057Homeodomain-like
SuperFamilySSF466891.98E-296103IPR009057Homeodomain-like
SMARTSM007175.0E-15858IPR001005SANT/Myb domain
PfamPF002496.5E-16956IPR001005SANT/Myb domain
CDDcd001674.51E-101156No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2360110IPR009057Homeodomain-like
SMARTSM007176.5E-1561109IPR001005SANT/Myb domain
PROSITE profilePS5129419.92161111IPR017930Myb domain
PfamPF002497.9E-1562107IPR001005SANT/Myb domain
CDDcd001673.33E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
METSFGVRKG AWTSEEDDLL RKCVEQYGEG KWHQVPLRTG LNRCRKSCRL RWLNYLKPNI  60
KRGHFTADEV DLIIRLHKLL GNRWSLIAGR LPGRTANDVK NYWNTHRSKK PNTCKKDAMT  120
INKPVKITKA NIFRPRPRTI SNKFFWSFEE IPLVTVSNTG HIGDQDNNNN NNNNNLRTSQ  180
AALPQIEKES GCEWWEILLP DEEEEKERND IASDNNSGSS KDIKNNHITC LFEEGNEDHN  240
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2191137110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27763.m000042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015695.11e-168transcription factor MYB113
SwissprotQ9FNV93e-66MY113_ARATH; Transcription factor MYB113
TrEMBLB9T6Z21e-177B9T6Z2_RICCO; R2r3-myb transcription factor, putative (Fragment)
STRINGXP_002534011.11e-178(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-68myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]