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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27749.m000334 | ||||||||
Common Name | RCOM_0069830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 27942 Da PI: 10.3954 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.5e-12 | 83 | 128 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+e+Er+RR riN f+eLr++lP++ K Ka++L ++++++k+L 27749.m000334 83 KHKEAERKRRVRINGQFAELRTVLPNL-----IKRKKASVLAETIKCLKDL 128 6*************************9.....6899************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.751 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.79E-9 | 82 | 133 | No hit | No description |
Pfam | PF00010 | 4.1E-9 | 83 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-13 | 83 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-11 | 83 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-8 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.21E-4 | 170 | 233 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MMWRNFLQIA ELFSPLFHCS RYHFSPFKIH GVKPISTCYS SGSYSKKINV HSSAANFMDE 60 VNYKNLLATS IPKEEAKLMS ALKHKEAERK RRVRINGQFA ELRTVLPNLI KRKKASVLAE 120 TIKCLKDLVN TLSELKEIYG VGRLSSVFSG GTDMLRVEYS PGQGLKLVKV MLSCEDKRKL 180 MFDIARAVRS VKGKLVKAEI SIMCGWTECV LWVQGINSYQ QLQILKTALG AVIEPKRPNN 240 KPQLCW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 93 | KHKEAERKRRVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27749.m000334 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015163.1 | 1e-160 | transcription factor bHLH131 | ||||
TrEMBL | B9SXH1 | 0.0 | B9SXH1_RICCO; Uncharacterized protein | ||||
STRING | XP_002530690.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 3e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 27749.m000334 |