PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27733.m000033
Common NameRCOM_0066810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 305aa    MW: 34009.8 Da    PI: 8.8545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27733.m000033genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.8e-061952331154
                    HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  27733.m000033 195 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 233
                    5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.925184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0035190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-12194250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-7194237No hitNo description
Gene3DG3DSA:4.10.280.101.4E-9198241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNPRGFSLDQ SQFSPHGSSS DSTVTCQGLK TSFQMESAAI YGSPSTMLQR LLGSDNQHHQ  60
HQQQQQQQPS FENRSMNYPY GANYCITSNE LVPSWSKVPQ FLRNSPPKQS PQSQLHFSNN  120
APFWNASASS MNDVCPSFFP PLQQQFPTSS YEEKPKNISE VRESSSTTTV KKSGSETATK  180
RPRNETASTV PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVTVL  240
STPYMKSGAP IHHQQSSDKS KDPEGQKQAD LRSRGLCLVP VSITFPVTHE TTVDYWTPTF  300
GGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap27733.m000033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583980.10.0transcription factor bHLH123, partial
SwissprotQ8GXT33e-80BH123_ARATH; Transcription factor bHLH123
TrEMBLB9T8770.0B9T877_RICCO; Transcription factor, putative
STRINGXP_002534446.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]