PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27538.m000332
Common NameLOC8266275, RCOM_0034760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 842aa    MW: 91823.6 Da    PI: 6.027
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27538.m000332genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-182583357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  27538.m000332 25 KYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                   56789****************************************************97 PP
2START156.32.5e-491633672201
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +
  27538.m000332 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVY 257
                    7899******************************************************.7777777777***********999999999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++ +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s
  27538.m000332 258 SQVYAPTTLAPaRDFWTLRYTSSLDNGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYES 353
                    *************************************99999998999************************************************ PP

                    HHHHHHHHHHHHTX CS
          START 188 glaegaktwvatlq 201
                    + + ++k++ a+l+
  27538.m000332 354 SKVVAQKMTIAALR 367
                    *********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-18883IPR009057Homeodomain-like
PROSITE profilePS5007115.2732084IPR001356Homeobox domain
SMARTSM003891.0E-142288IPR001356Homeobox domain
SuperFamilySSF466893.38E-162386IPR009057Homeodomain-like
CDDcd000861.24E-152585No hitNo description
PfamPF000461.0E-152683IPR001356Homeobox domain
CDDcd146863.68E-677116No hitNo description
PROSITE profilePS5084827.421153381IPR002913START domain
CDDcd088753.60E-68157373No hitNo description
SuperFamilySSF559618.65E-34162374No hitNo description
SMARTSM002344.7E-40162372IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-19162354IPR023393START-like domain
PfamPF018527.6E-47163367IPR002913START domain
PfamPF086701.9E-49698841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAMAMVQHRE TSSGSINKHL TDSGKYVRYT AEQVEALERV YSECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLQ TASAATDASC DSVVTTPQHS LRDANNPAGL LSIAEETLAE FLSKATGTAV  180
DWVQMPGMKP GPDSVGIFAI SQSCSGVAAR ACGLVSLEPT KIAEILKDRP SWFRDCRSLE  240
VFTMFPAGNG GTIELVYSQV YAPTTLAPAR DFWTLRYTSS LDNGSLVVCE RSLSGSGAGP  300
NAAAAAQFVR AEMLPSGYLI RPCDGGGSII HIVDHLNLEA WSVPEVLRPL YESSKVVAQK  360
MTIAALRFIR QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAINGFN DDGWSLMSCD  420
GAEDVIVTIN STKNLSSTSN AANSFAFLGG ILCAKASMLL QNVPPAVLVR FLREHRSEWA  480
DFNVDAYSAA SLKAGSYAFP GMRPTRFTGS QIIMPLGHTI EHEELLEVIR LEGHSLVQED  540
AFVSRDIHLL QICSGIDENA VGACSELVFA PIDEMFPDDA PLLPSGFRII PLDSKTKDTQ  600
DALTTSRTLD LTSSLEVGPA ANNTAGDASS SQSTRSVLTI AFQFPFESNL QENVATMARQ  660
YVRSVISSVQ RVAMAISPSG LGPAVGPKLS PGSPEALTLA HWICQSYSYY LGAELLRSDS  720
LAGDSVLKQL WHHQDAILCC SLKSLPVFIF ANQAGLDMLE TTLVALQDIT LDKIFDESGR  780
KALCADFAKL MQQGFAGLPG GICMSTMGRH VSYEQAVAWK VLAADESTVH CLAFSFVNWS  840
FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27538.m000332
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529946.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLB9SVC70.0B9SVC7_RICCO; DNA binding protein, putative
STRINGXP_002529946.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]