![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 27524.m000293 | ||||||||
Common Name | RCOM_0030050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23832.5 Da PI: 9.9794 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.2 | 1.5e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C +dC+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ +q++ 27524.m000293 4 SCNGCRVLRKGCGDDCAIRPCLqwirsPDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNWAHCQSA 99 6**********************************************************************************************9 PP DUF260 92 aelallk 98 ++ +l++ 27524.m000293 100 VDSVLRG 106 9988766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.623 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-24 | 4 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCGDDCA IRPCLQWIRS PDAQANATLF LAKFYGRAGL INLIEAGPQH 60 LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GNWAHCQSAV DSVLRGTPIV QMPSSGSDTP 120 QLPPQLIDPL KTYDIRHVSK EAELNKVKSR SRFKRPVNRT PSSPTDQPTG SVRIGDLSFE 180 PLREQLMSQM KSRELVTSSI IASRFLNAYL EFLR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 27524.m000293 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015582369.1 | 1e-140 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 9e-74 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | B9T058 | 1e-157 | B9T058_RICCO; LOB domain-containing protein, putative | ||||
STRING | XP_002531627.1 | 1e-158 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68510.1 | 4e-76 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 27524.m000293 |