PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27494.m000044
Common NameLOC8278089, RCOM_0022220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 359aa    MW: 39355.1 Da    PI: 7.0784
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27494.m000044genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17263296134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  27494.m000044 263 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 296
                    99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-772341IPR016679Transcription factor, GATA, plant
SMARTSM004013.8E-16257307IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.609257293IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15261320No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14261294IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.07E-14262309No hitNo description
PfamPF003202.5E-15263296IPR000679Zinc finger, GATA-type
PROSITE patternPS003440263288IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MIGPTNFIDE IDCGSFFDHI DDLLDFPTDD IDSCLPDCTN AVNVNGNVNS FPSIWSTQSD  60
SLPGSHSVFS SNTNNNSASD LSAELSVPYE DIVQLEWLSN FVEDSFSGGS LTMNKEESTS  120
INKDSSHHHQ FQTSSPVSVL ESSSSCSGEK TVPRSPEIIA SGRRGRARSK RPRPATFTPR  180
PAMQLISPSS SATETPHQPF VVPKAPSDSE NYAESRLLIK LPNKQVVPEH KKKKKIKFTV  240
PLGSAETSHD SSPPPQQQAV RKCMHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE  300
YRPAASPTFV PSLHSNSHKK VLEMRNKVGD KLVMPGATTI MTNSPEFIPN NSNLAMDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169173KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap27494.m000044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534043.10.0GATA transcription factor 8
TrEMBLB9T7240.0B9T724_RICCO; GATA transcription factor
STRINGXP_002534043.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-43GATA family protein