PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27469.m000162
Common NameRCOM_0016380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 267aa    MW: 29877.5 Da    PI: 8.2263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27469.m000162genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.6e-10159206455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+++Er RR++iN+++  L++l+P +    +k +  a +Le+ ++Y++sLq
  27469.m000162 159 SHSIAERVRREKINNKLRCLQDLVPGC----HKSMGMAVMLEEIINYVHSLQ 206
                    8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17153223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.97E-11153210No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-9161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGMNMNMHML KQPQHLPELN PSSSLDTFGV ADFSVDSFLA HQQQPEFPVS NYGQNNSTIN  60
NLSSSTFHPD MLNSSAAPPI VHTVDSSQYV IFRDSKKRKV EAQSTSSSKN VSPTTSTTTN  120
TKQKNNLGRD KKGKNKEKEV EKAEEVIHVR AKRGQATDSH SIAERVRREK INNKLRCLQD  180
LVPGCHKSMG MAVMLEEIIN YVHSLQNQVE FLSMELAAAS CSYDLNLETE SSKKAQVTSS  240
AGTQETQKWL RERYGDLGCC YQSTWSI
Cis-element ? help Back to Top
SourceLink
PlantRegMap27469.m000162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533944.20.0transcription factor BEE 1 isoform X2
TrEMBLB9T6S50.0B9T6S5_RICCO; DNA binding protein, putative
STRINGXP_002533944.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-46BR enhanced expression 1