PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27356
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 535aa    MW: 57019.2 Da    PI: 10.9221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27356genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07298350348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                      +W+  E + lv++v+ +G g+W+ I +           +R++ ++k++w+++l
            27356 298 PWSLPEVKALVRGVTHYGRGQWADIKALRLdgvsdalVNRSAVDLKDKWRNLL 350
                      8***********************99988889999999*************96 PP
2Myb_DNA-binding29.61.6e-09440489248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       +WT+ E e lvd+v++ Gg +W+ I +      ++Rt+ ++k++w+++l
            27356 440 SPWTAVEAEALVDGVERCGGCRWTVIKKSDDpalERRTAMDLKDKWRNLL 489
                      58*************************99999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.077291354IPR017930Myb domain
SuperFamilySSF466891.25E-12294352IPR009057Homeodomain-like
SMARTSM007172.1E-5295352IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-11297351IPR009057Homeodomain-like
CDDcd116602.49E-17297351No hitNo description
PfamPF002491.8E-5298350IPR001005SANT/Myb domain
PROSITE profilePS5129411.312434493IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-11436490IPR009057Homeodomain-like
SMARTSM007171.9E-6438491IPR001005SANT/Myb domain
PfamPF002493.5E-6440489IPR001005SANT/Myb domain
CDDcd116602.38E-18441489No hitNo description
SuperFamilySSF466893.04E-14441517IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MTPPAIAVRR HAAEMRRDGD AKAREGGGAA TRTAAATAAG GFPFAMPGNA MMMAAFGPNV  60
EGLRRQAAVM KGGMTDGGVT APMIFAPMPF NPFAMMPMVG MGATPAGATF RGGVEDEKKN  120
SPSASDGSHR TTTHVDGEDV EGGERVEAGQ EATCSGRGLA MMIPPPPMLT VPTSLKNARL  180
EALSVPDRTQ TPGIQSPFSA ANVLCAMMTR GSDDENEHPT APAPKPRGQG KRRSEYLGPL  240
SVRCPKKRRT MKTSRARSNL TTFDAAPSAA PKPPSAPEAA RFDVGAMAAP AKPKTHRPWS  300
LPEVKALVRG VTHYGRGQWA DIKALRLDGV SDALVNRSAV DLKDKWRNLL RVAMLPALYK  360
RREVNGVPAD ILEQVRVLAS SKGNEGAQRS SKENRAPRSG TSVATVKAAA TDAVTAVKAE  420
PIAASPSSNV KGVRRSKHHS PWTAVEAEAL VDGVERCGGC RWTVIKKSDD PALERRTAMD  480
LKDKWRNLLQ LASLPAQSRR KQDTPPEFLE RVLDLEARYG NARRKGRKSV VKTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230248KRRSEYLGPLSVRCPKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005940.0CP000594.1 Ostreococcus lucimarinus CCE9901 chromosome 14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421395.10.0predicted protein
TrEMBLA4S7540.0A4S754_OSTLU; Uncharacterized protein
STRINGABO996880.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-13TRF-like 3