PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 270954 | ||||||||
Common Name | C3HDZ1-2, SELMODRAFT_270954 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 92507.8 Da PI: 6.1894 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 15 | 71 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r+++ + +++ rq+kvWFqNrR +ek+ 270954 15 IRYTPEQVEALERVYHECPKPSSIRRQQIVRDYpvlgNIEPRQIKVWFQNRRCREKQ 71 689****************************************************97 PP | |||||||
2 | START | 131.3 | 1.1e-41 | 183 | 389 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqals 102 +aee+++++++ka+ ++ W + + +++g++++ + + s++ g a+ra+g+v+ ++ v+e+l+d++ W ++++ e++ + g+l+l +++++a++ 270954 183 IAEETLNSFLAKATGTAVDWIQIPGMKPGPDSIGTAAISHAGAGIAARAWGLVELEPI-RVAEILKDRPSWLWDCRRLEVVGSFPTPngGTLELVYTQMYAPT 284 7899******************************************************.8888888888************99765446************** PP -SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXX CS START 103 plvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqr 202 +l+p Rdf+++Ry+ l++ +++++++S++ ++p + + Rae+lpSg+li+p ++g s +++v+h+dl+++ + ++lr+l++s+++ +++ ++ +l++ 270954 285 TLAPaRDFWTLRYTIFLEDRSLAVCERSLTGIHNKPAikNGDFERAEMLPSGFLIRPYEGGVSSIHVVDHWDLESWKVLEVLRPLYESSVILAQRVTLGALHH 387 *******************************99999998999*****************************************************99999988 PP XX CS START 203 qc 204 ++ 270954 388 LK 389 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.5E-15 | 10 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.57E-16 | 13 | 73 | No hit | No description |
SuperFamily | SSF46689 | 8.98E-16 | 13 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-18 | 15 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.6E-15 | 15 | 71 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.321 | 16 | 72 | IPR001356 | Homeobox domain |
CDD | cd14686 | 7.95E-4 | 65 | 101 | No hit | No description |
PROSITE profile | PS50848 | 21.59 | 173 | 400 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-28 | 176 | 391 | No hit | No description |
SMART | SM00234 | 8.3E-29 | 182 | 391 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-14 | 182 | 365 | IPR023393 | START-like domain |
Pfam | PF01852 | 2.1E-38 | 183 | 389 | IPR002913 | START domain |
Pfam | PF08670 | 2.3E-38 | 698 | 837 | IPR013978 | MEKHLA |
SuperFamily | SSF55785 | 9.54E-5 | 745 | 835 | IPR000014 | PAS domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MKVKDKSDFD TGKYIRYTPE QVEALERVYH ECPKPSSIRR QQIVRDYPVL GNIEPRQIKV 60 WFQNRRCREK QRKETSRLQS VNSSLTAMNK IIMEENERLT KHSSQLALEN QCLRQQLQQI 120 RSGGGAADPD KKSAAAADRF NDQSALALAD RSPDSEVTGG VPQHLAITPQ SPRDSSPAGL 180 LSIAEETLNS FLAKATGTAV DWIQIPGMKP GPDSIGTAAI SHAGAGIAAR AWGLVELEPI 240 RVAEILKDRP SWLWDCRRLE VVGSFPTPNG GTLELVYTQM YAPTTLAPAR DFWTLRYTIF 300 LEDRSLAVCE RSLTGIHNKP AIKNGDFERA EMLPSGFLIR PYEGGVSSIH VVDHWDLESW 360 KVLEVLRPLY ESSVILAQRV TLGALHHLKR ISQESSGEVL MRGGQQPAAL RAFSHRIARG 420 FNDAVNAFAE DGWTSDGGDD VTISINTALG AKAAGAQGGD RFCAFGGILC AKSSMLLQNV 480 PAATLIRFLR EHRSEWAGVN IASDSVSTLK IGGYGTSKGN ADEECLFPEL LEVIKMEGYG 540 NGMLPKDTVL LQLCTGYEDT ASGTCAQLVF APVDPAVSND IPLLPSGFRV IPLDNGLDAS 600 ALSRTLDLTS TLEGSADGGK FPDDFSGSGG NMRSVLTMAF QFVFEAHNRE EIIASARQYV 660 RNVMVSVQSI AMALASYRLS PPQQGPKQQE AKIFALQIMR SYSLGLQRCR ASFNVEFNES 720 QPESTDAFWH DKNAILCCTW KAIPEFIFAN RAGLEMMETT WRDLHSLPYE RTFDATGRET 780 AYSDFAQVIH QGYAYLHGGI RLSSKGHPVT YDRAMAWKVF DDDGAVVCIA FMFTDWSIVA 840 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ657199 | 0.0 | Selaginella moellendorffii class III HD-Zip protein HDZ32 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024533017.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Refseq | XP_024545142.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | Q0Q432 | 0.0 | Q0Q432_SELML; Class III HD-Zip protein HDZ32 | ||||
STRING | EFJ26528 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 270954 |
Entrez Gene | 9650587 |
Publications ? help Back to Top | |||
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