PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 26838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 27602.7 Da PI: 9.942 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.7 | 6.4e-29 | 109 | 162 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rl+Wtp+LH++F+ av++L G + A+Pk+i+++m+vkgLt+e+v+SHLQkYRl 26838 109 RQRLVWTPQLHAQFIAAVQKL-GVKTAVPKAIMKIMNVKGLTRENVASHLQKYRL 162 58*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.517 | 106 | 165 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-29 | 107 | 166 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-19 | 107 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-24 | 110 | 162 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-8 | 112 | 161 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTVYPAVYGA YDAMRAMSPM TYDAYAGAAR AVAVPGDSFS RQIQERAYAS AFTFTRQWNY 60 LQHAAAAQHA AFASGSRGGG TMMDLLAATG SAAAERDIGV EREVELSKRQ RLVWTPQLHA 120 QFIAAVQKLG VKTAVPKAIM KIMNVKGLTR ENVASHLQKY RLTLKRAQDS SESTRASGDA 180 TDAKRSDVRA GRKRKDREEK GKTNSGSGQG SGQGSDGGSA EHSASENLEN RAKRISSSEE 240 EETRQITLAV DHNDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-24 | 109 | 165 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000592 | 0.0 | CP000592.1 Ostreococcus lucimarinus CCE9901 chromosome 12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420647.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S5P7 | 0.0 | A4S5P7_OSTLU; Uncharacterized protein | ||||
STRING | ABO98940 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 2e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 26838 |