PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 266892
Common NameABI5C-1, SELMODRAFT_266892
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bZIP
Protein Properties Length: 401aa    MW: 42967.8 Da    PI: 9.0708
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
266892genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.4e-14320365550
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
             +r+rr++kNRe+A rsR+RK+a++ eLe +v +L++eN++L+k  e
  266892 320 RRQRRMIKNRESAARSRARKQAYTVELEAEVTQLKEENMKLRKMQE 365
             79****************************************6443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-12316382IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932318362IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.44E-10320363No hitNo description
Gene3DG3DSA:1.20.5.1709.3E-13320365No hitNo description
PfamPF001702.9E-12320368IPR004827Basic-leucine zipper domain
CDDcd147072.63E-28320374No hitNo description
PROSITE patternPS000360323338IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MVLPRQQSIY SLTLDEFQSS LGEPGKNFGS MNMDELLKNI WTAEESQAMA AAFLGIQRQN  60
SLTLLPLPQS LSAKTVDEVW KDIGPLDGYG TAGDAAVPPM KPRQGTYGEM TLEDFLVKAG  120
VMAPDAIEHA QAGYYPTTST ATANGSYGKV TRDAAAVPGG GTPILGGMTG LLPGKKEPVE  180
VNDPMLGIGL GPARNNLSSP NGFYAASSAA AQAAKHQAEW IESQYKNSTA LAQQQQQQLM  240
QLAAYNGNAA VSTGLGMGLN GGTAGGVVCI KETSPGSPLS DALDQNGGYG GLSNYGGGFD  300
GPLRGRKRIL DAPLEKIVER RQRRMIKNRE SAARSRARKQ AYTVELEAEV TQLKEENMKL  360
RKMQEEENIK RKKQQQALEV ITPMTQHLPK MLKRTLTGPW *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024525601.10.0bZIP transcription factor 46 isoform X1
TrEMBLD8R1210.0D8R121_SELML; Uncharacterized protein ABI5C-1
STRINGEFJ338280.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10063711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.11e-32abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]