PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 26252
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CAMTA
Protein Properties Length: 1094aa    MW: 120634 Da    PI: 6.6192
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
26252genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.43.4e-50481653118
   CG-1   3 ke.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103
            k+ k+rwl+n+e++++L n++ + ++   +++ rp  g+l+L+nrk+vr+frkDG++w+kkkdgkt+rE+hekLKvg+ve+l+cyY+hsee+++fqrrcywlL+
  26252  48 KTaKTRWLRNTEVCDVLLNYAAYGFEPsvDAPVRPLGGTLFLINRKVVRFFRKDGHNWQKKKDGKTIRETHEKLKVGTVELLNCYYTHSEEDAKFQRRCYWLLN 151
            44499******************99987799************************************************************************* PP

   CG-1 104 eelekivlvhylevk 118
            ++ e  vlvhyl+vk
  26252 152 MD-EGAVLVHYLTVK 165
            **.********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143770.16943170IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-5046165IPR005559CG-1 DNA-binding domain
PfamPF038599.9E-4650163IPR005559CG-1 DNA-binding domain
PfamPF018334.8E-5475549IPR002909IPT domain
SuperFamilySSF812962.64E-14475560IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.105.5E-4475562IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.201.2E-13710837IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.34E-13735834IPR020683Ankyrin repeat-containing domain
CDDcd002044.37E-12741833No hitNo description
PROSITE profilePS5029714.186744825IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.404777809IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MRRRVAGRAI ETIPTAPSGA TIPARALGEP TRAPTDAAAR ERANEVVKTA KTRWLRNTEV  60
CDVLLNYAAY GFEPSVDAPV RPLGGTLFLI NRKVVRFFRK DGHNWQKKKD GKTIRETHEK  120
LKVGTVELLN CYYTHSEEDA KFQRRCYWLL NMDEGAVLVH YLTVKKEPQR PSSGVATPGG  180
AARGALGSMG RDGKRAIGSK APLSSKIGNR ALSSKIGSVA SKIKSASTAG RRGAGRSRKD  240
VELESFLDGA ADDFSRQNVS DMLNRDDEDL ALIFQETGLD DAEQGASEWK YALDSEYISD  300
DDAPATSLSR LMREFNGLDD EYDDDCVDGR ARENSDQQTP TFSRSLVHSD SPRTGGEMSI  360
EEFERRIERI RSQWQNQVTG DGDSTSMERI ERQINTLEQD VERAMASSLQ RASDDPGGEP  420
STSAGDADAA DELSGHRANA TERGDAETSM HTRRTSGIVR HVPATPSGVH VLWSIVDFTP  480
SWDDVSGGAK VIITGNPLVE LEPGIGMCCV FGTIAVPVEQ LAPNVLKCYA PAHAPGVVSM  540
FLVMESGNGH PVSEISSFEF MESLDPSRGV DVDRRDMIDQ SANMSDRDFQ MRLVQLLTTL  600
GSDSSNSVGN DSGEKSGDRT THSSALVNDS VMHMNALSAL RAANRLELDP YNLDGVKNEE  660
LVVLLSGMLQ ARLKSVIVHE NRRMKARRAL PSSAVAMQEV EEVAKTGVIS DKIVETAVEK  720
TQQTHKALLK VAFTPSAYKR KDQTGLTLFH CCAALGIEWA VRAMCVTGVD LNHTDAYNRS  780
ALHWAVARGH EMVVATLLNY GAKSRSMCQW EGESFTPAEL AVRCGYEGIS AYISEANLAS  840
ALENINLRNS GIPRQRCRTS RGGGVFQAHR FRRTILSDTE GSDSEEHSVR RSTRVNSEKK  900
RAYHRRKTSR LTASTTADGD DSETEAAFVV KRAENARRSL LDTLYNLNVK PEFIDADIHA  960
RLGKRRGRRV RQVDVQSLMS ELLTPVGDNP THSEMMSPSR RPVLRARRAP KPVVGVSITN  1020
DVKGREDSED SESLDDDEDE EAIQKNFSRI QTSLQSAHSR TQYLRLRRLT NQLRVELKKL  1080
KDDGQFSDDD DDR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1680687NRRMKARR
2960969RLGKRRGRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005900.0CP000590.1 Ostreococcus lucimarinus CCE9901 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420194.10.0predicted protein
TrEMBLA4S4200.0A4S420_OSTLU; Uncharacterized protein
STRINGABO984870.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP513289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.21e-41ethylene induced calmodulin binding protein