PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 25564
Common NameSELMODRAFT_25564
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HSF
Protein Properties Length: 178aa    MW: 20787.3 Da    PI: 7.6039
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
25564genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.76.7e-3791002102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+++++++swse+g++fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgF+k+ +++         weF++++F+kg+++ll++i+
         25564   9 FLTKTFHLVDDSSTDDVVSWSEDGTTFVVWRPPEFAKDILPNYFKHNNFSSFVRQLNTYGFRKIVSDR---------WEFANEYFRKGQQDLLCEIH 96 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
         25564  97 RRKT 100
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-39393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-60598IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.1E-35698IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-33998IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-21932IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-214759IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404872IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-216072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
SHRSVPAPFL TKTFHLVDDS STDDVVSWSE DGTTFVVWRP PEFAKDILPN YFKHNNFSSF  60
VRQLNTYGFR KIVSDRWEFA NEYFRKGQQD LLCEIHRRKT GQPNTMQPIR QTSTAEDILW  120
SHVTTTSPVP SPRAPHFTAA VSICDENERL RRDNCILMSE LSRLRRLNDE VLLFVQNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A7e-265987110Heat shock factor protein 2
5hdk_B7e-265987110Heat shock factor protein 2
5hdk_C7e-265987110Heat shock factor protein 2
5hdk_D7e-265987110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965510.21e-130heat stress transcription factor B-4
SwissprotQ9C6351e-67HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD8R3E21e-130D8R3E2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ329301e-131(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-60heat shock transcription factor B4
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]