PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 25091
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CPP
Protein Properties Length: 511aa    MW: 54728.3 Da    PI: 8.9536
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
25091genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-15194232342
    TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
            +k+CnCkkskClk+YCeCfaag++C++ C+C++C+N++e+
  25091 194 SKKCNCKKSKCLKLYCECFAAGAFCKD-CSCQQCQNTTEN 232
            79*************************.********9875 PP
2TCR52.78.5e-17264303140
    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
            +++kgC+Ckks ClkkYCeCf+ag+kC++ CkCe+CkN++
  25091 264 RHTKGCHCKKSACLKKYCECFQAGVKCQDYCKCEGCKNND 303
            589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-13192232IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.257193304IPR005172CRC domain
PfamPF036388.8E-12195229IPR005172CRC domain
SMARTSM011141.3E-14264305IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12267302IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MNRVRLTNAS DDARRRSDGD GKATNGGGVS DVARLALSAE ASIQRGNGGG GRARRQLDVE  60
FGELDVQALQ DDRYVLQNMY DEFDDSVIGV EEQGSYPRRG GASRGDGHED SASKRSSTTG  120
ASVEWTKGYT KTLKNFDADS PRVGTRSARA PRGGVEASKA VVAKRGVATA KNSSLASNAS  180
AMKNASACRE FVASKKCNCK KSKCLKLYCE CFAAGAFCKD CSCQQCQNTT ENEAIVTKTR  240
QQIEQRNPYA FESKIMADAG DDARHTKGCH CKKSACLKKY CECFQAGVKC QDYCKCEGCK  300
NNDNGPSPAL PRGGAAKASK VSKSKARSRE TVAATTMAAK ELQDDLIIED FKLTGVMGSP  360
LRAFEHTDDL SSEYSNLSKS VEQSPLRTLL LSEGVQLSPF FSTSSLPATA LSPLRAGQMS  420
PLRPTPSHGF MSPLTPGMRP GKYSIRSSSS RGKAPVPLFN EDSGHGGEFK TPRDRKTNTV  480
FGGMHDAAKD GPLRATFTSP IPLSTPDVYE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2119530612125Protein lin-54 homolog
5fd3_B1e-2119530612125Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005890.0CP000589.1 Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419860.10.0predicted protein
TrEMBLA4S3570.0A4S357_OSTLU; Uncharacterized protein
STRINGABO981530.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.18e-27TESMIN/TSO1-like CXC 2