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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 24518 | ||||||||
Common Name | SELMODRAFT_14382, SELMODRAFT_24518 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Trihelix | ||||||||
Protein Properties | Length: 213aa MW: 25582.2 Da PI: 10.0118 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.4 | 2.2e-29 | 126 | 208 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi++r me+++++ k+p Wee+s+ ++ +g++rs+k+Ckekwen+nk+y+k+ + ++ e+++tcpyf++l+ 24518 126 RWPRAEVQALIQLRAAMETKFQEVGPKGPFWEEISAGLACQGYSRSAKRCKEKWENINKYYRKTSTKKRP---ENTKTCPYFQELD 208 8***************************************************************998885...78899******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.1E-4 | 123 | 185 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-5 | 124 | 182 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.0E-21 | 125 | 209 | No hit | No description |
CDD | cd12203 | 1.57E-24 | 125 | 189 | No hit | No description |
PROSITE profile | PS50090 | 7.143 | 126 | 183 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
KKRKRKSWKE RMAFFENLVK KFMEKQEQMQ QNFLELLEKR EQERMKRDET WRKQEVARLN 60 REYELRVEEH TRRINYDTAL ASALQKATGQ VLEMPHQGPV PSPYSNTLAE SNDDHHKEVC 120 DSMNKRWPRA EVQALIQLRA AMETKFQEVG PKGPFWEEIS AGLACQGYSR SAKRCKEKWE 180 NINKYYRKTS TKKRPENTKT CPYFQELDVL YQK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024527162.1 | 1e-155 | trihelix transcription factor GT-2-like | ||||
Refseq | XP_024527164.1 | 1e-155 | trihelix transcription factor GT-2-like | ||||
TrEMBL | D8R5N9 | 1e-157 | D8R5N9_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ16698 | 1e-158 | (Selaginella moellendorffii) | ||||
STRING | EFJ32515 | 1e-158 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP663 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 3e-50 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | 24518 |
Entrez Gene | 9635577 | 9652283 |
Publications ? help Back to Top | |||
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