PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 24342
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 557aa    MW: 59027.5 Da    PI: 6.8947
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
24342genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-06235255526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               C+ f++ G C+ Gd C +aHg
    24342 235 ACPEFRK-GSCPQGDVCEYAHG 255
              5******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002046.52E-156129No hitNo description
Gene3DG3DSA:1.25.40.204.9E-176126IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-156127IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.2325183IPR002110Ankyrin repeat
PROSITE profilePS5029716.651126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00165180IPR002110Ankyrin repeat
PfamPF136376.1E-652109No hitNo description
PROSITE profilePS500888.68386121IPR002110Ankyrin repeat
SMARTSM002485.786118IPR002110Ankyrin repeat
SMARTSM003560.0016230256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.169230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.014265289IPR000571Zinc finger, CCCH-type
SMARTSM0035627265288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSLSTSPVLA AAASNDLAQV RWLLERENVP VDFMGDWYAE PRNGGKGLER QRRTPCMVAA  60
SHGSLEVLLY VLQMGADPNM RSEDDERCTA MHCAAAGGAA LSTDAIKTLL LFGADRNARD  120
TYGRVPADCL PGTTSEANFN GSDAGGSSSG GSASTGGNGR GHGGPGSGAA VNSQGVVLQD  180
PDDDTLMSDE FRMYEFKIRR CSRTRAHDWT ECPYTHPGEK ARRRDPRRFN YCGTACPEFR  240
KGSCPQGDVC EYAHGVFECW LHPSRYRTQL CKDGAACDRR ACFFAHHTSQ LRVPTDAYGN  300
PTGNLSPNTP SPTGSGSPQN GSPRQSSASL DWSMARNSES DSTHNMAAAM LKGNAMMGAG  360
AGAFAANGAV PGMSFPPLPR VDSMLLQSQY GQQQSQQQHG QSPTMPQQQL HQQQMMANYV  420
SSMSGMSGVT GDLQGAMQGA FPLGYSSMMQ GNGMFNQADP SLQAHQMLPQ QQTSAAYMAG  480
GNVGGVGAGL KSVQSQSSGS GGSTISEQQG LYAGAKLFTL PPNGVRQAHM RRNSSSFQHL  540
GMIEGVLDGT DGELRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14152RNGGKGLERQRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005840.0CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417127.10.0predicted protein
TrEMBLA4RVF70.0A4RVF7_OSTLU; Uncharacterized protein
STRINGABO954200.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.24e-68C3H family protein