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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 20533 | ||||||||
Common Name | MICPUCDRAFT_20533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | C2H2 | ||||||||
Protein Properties | Length: 148aa MW: 16591 Da PI: 10.3942 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 23 | 46 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ Cgk F +L +H r+ H 20533 23 CEhpGCGKEFAWAQDLAKHVRRaH 46 77779****************999 PP | |||||||
2 | zf-C2H2 | 16 | 3.3e-05 | 53 | 77 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C k+F + +L+ H rtH 20533 53 FQCShdGCEKRFYERKLLVAHERTH 77 89**********************9 PP | |||||||
3 | zf-C2H2 | 16.3 | 2.7e-05 | 83 | 108 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C Cgk+F+ + +L+ H + H 20533 83 FACAhpGCGKTFRARNSLTYHVKAmH 108 668888***************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 13.36 | 21 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0091 | 21 | 46 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-9 | 22 | 47 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 23 | 46 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.79E-8 | 25 | 77 | No hit | No description |
PROSITE profile | PS50157 | 14.17 | 53 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-10 | 53 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0084 | 53 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 77 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.32E-15 | 64 | 123 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-13 | 77 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.926 | 83 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0017 | 83 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 85 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.81 | 114 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGAATRPLGA PPPSKPPRGK VACEHPGCGK EFAWAQDLAK HVRRAHSGEA PKFQCSHDGC 60 EKRFYERKLL VAHERTHTDE RPFACAHPGC GKTFRARNSL TYHVKAMHSR AETLRCDVDG 120 CAFTTKKPEL LASHRAKHAR RVTERAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gli_A | 2e-12 | 18 | 142 | 1 | 154 | PROTEIN (FIVE-FINGER GLI) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003061688.1 | 1e-105 | predicted protein, partial | ||||
TrEMBL | C1N0S1 | 1e-104 | C1N0S1_MICPC; Predicted protein (Fragment) | ||||
STRING | XP_003061688.1 | 1e-104 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP10650 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 3e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 20533 |
Entrez Gene | 9686880 |
Publications ? help Back to Top | |||
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