PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 203111
Common NameMICPUCDRAFT_31771
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 330aa    MW: 38188.9 Da    PI: 10.3086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
203111genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
           203111  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding34.83.7e-1160103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
           203111  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139219.8E-141070No hitNo description
CDDcd001671.32E-111053No hitNo description
SuperFamilySSF466891.21E-2133109IPR009057Homeodomain-like
CDDcd116591.47E-3155106No hitNo description
Gene3DG3DSA:1.10.10.609.0E-1557104IPR009057Homeodomain-like
SMARTSM007172.5E-1258105IPR001005SANT/Myb domain
PROSITE profilePS5129416.52958107IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLERYE KLLDAACHGY NDSELTDDPR  120
RLRPGEIDPN PESKPARPDP VDMDEDEREM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIQTVKR AKRVRGMDYN AEIPFEIKPV PGPYSTDMEF REHLHQSNVS  240
FAPSSLTEYE KPHKKDLEDQ LMKEDVRQQR SQDRKTTPSA VQQLRALVVS NTGKHKRKLE  300
LPPPNVHVSG LENLINLDRP ESRIKIHKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-12623173313Cell division cycle 5-like protein
5xjc_L1e-12623173313Cell division cycle 5-like protein
5yzg_L1e-12623173313Cell division cycle 5-like protein
5z56_L1e-12623173313Cell division cycle 5-like protein
5z57_L1e-12623173313Cell division cycle 5-like protein
5z58_L1e-12623173313Cell division cycle 5-like protein
6ff4_L1e-12623173313Cell division cycle 5-like protein
6ff7_L1e-12623173313Cell division cycle 5-like protein
6icz_L1e-12623173313Cell division cycle 5-like protein
6id0_L1e-12623173313Cell division cycle 5-like protein
6id1_L1e-12623173313Cell division cycle 5-like protein
6qdv_O1e-12623173313Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056512.10.0predicted protein, partial
SwissprotP929481e-137CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLC1ML820.0C1ML82_MICPC; Predicted protein (Fragment)
STRINGXP_003056512.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-132cell division cycle 5
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]