PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 199087
Common NameMICPUCDRAFT_41764
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 875aa    MW: 91435.7 Da    PI: 6.2674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
199087genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.9e-131363147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47
                     rg W +eE+  l dav+++G g+W++  +  +    kgRt+ q+k++w+++
           199087 13 RGYWDEEEENALRDAVQKHGIGSWEKMRHDEQfkvlKGRTGVQLKDKWRNL 63
                     899***********************999999*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.256168IPR017930Myb domain
SMARTSM007171.5E-91266IPR001005SANT/Myb domain
PfamPF002499.7E-101363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-141370IPR009057Homeodomain-like
SuperFamilySSF466897.03E-141471IPR009057Homeodomain-like
CDDcd116601.60E-161665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MPKASADPVT PFRGYWDEEE ENALRDAVQK HGIGSWEKMR HDEQFKVLKG RTGVQLKDKW  60
RNLIKFQHLR RGEAESAPYK SGARGPAPGS SKKRKADDDS KKKNASRDAG KGAKGVKGAK  120
KLTAKEKKAA AAKEAAAAKR EKARATAAKT ARTQDAVRRN QEALAKKLEA STKAAKKGGP  180
GGPGVKTAAG AGGASAADED NKKPTWGGPK KRFKTAYHDA EDAGGGATDE KGGAVTSAAA  240
AALSEATEAS RAAERALREA NAAVAESQRE REGAVAAVTS AEQVLIAVKT SVEDAEAMYN  300
NVREELARMH AYDHEEHDEH EEHEDDWDKY LHFGDGGEEK EKDGGDASPK RKTPRNSMRS  360
TMPAGAAGGA GAAATPAEPG AAAPEGVVVT AAEAEAAETA ARQFHALRGG MKDVETTHAA  420
NTAQASAADA AHHGGHAHHG GHHGFQPSLQ EAEQFLLSEL KKLEAANAAL MSARARLAEI  480
DRRLAAAIQR VGECEMRARR ERERVATLAA GAKAAGGGGG GGGAWGVEGG LDELDDDDDD  540
EEEEEEEEDS EEDSEEVERA AKKARRASHK EGGTSGGGGK VIEDRRFGIY DSRRYRMEGE  600
PAPPDPSDDE DSGPPYRSHE PATRGRPPGS GKGRKSAPSG ASRGAQEEKA GGKKKYLSHH  660
RDGTKLSSDI EVKPPSKGAR ARGYNGGRGG GAAAGAARGP GRPTRASAEV AAEAAAAAAA  720
DKHQGFRFKG DERLNARAGR SFVDSNAGVR SSGAWKMKRR RTRQAIGRPA VGPTSWAAVC  780
SNALWRVGEL EAAIARDDGD DGDGDGDEGG GSRMGGFGFG FGRGGGGGAD GDETSSEADS  840
DDGGFEGEDE GDLGMVLDLQ FDDELGWEND VALL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061570.10.0predicted protein
TrEMBLC1N1J80.0C1N1J8_MICPC; Predicted protein
STRINGXP_003061570.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP413177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.25e-09MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]