PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 192123
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 822aa    MW: 84063.6 Da    PI: 8.3394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
192123genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.2e-07368388526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               C+ f++ G C++ d C F+Hg
   192123 368 ACPEFRK-GSCPRSDACEFSHG 388
              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002482000333IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.7E-176143IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.1E-15634IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.1E-1562142IPR020683Ankyrin repeat-containing domain
CDDcd002047.40E-1364140No hitNo description
PROSITE profilePS5029718.74965141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008813.3576597IPR002110Ankyrin repeat
SMARTSM002486.7E-66594IPR002110Ankyrin repeat
PfamPF136378.9E-866113No hitNo description
SMARTSM00248650100132IPR002110Ankyrin repeat
PROSITE profilePS5010311.958363390IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013363389IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-5368388IPR000571Zinc finger, CCCH-type
SMARTSM003567398421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0061157Biological ProcessmRNA destabilization
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MSLSTSPILA AAASNDLATT RWLLEREGVP IDLRGDWFAP ETPTNGPGEA NNNNANNATG  60
ALRRKRRTPL MVAAAHGSLD VLSYLLAAGA DVNARSDDDE RCTGMHCAAS GGSSLAADAI  120
ALLMRFGADS GALDARGRAP VDVLPPSSGG ISVVNGGSNA PEYGVSYTGG NAATNLATKS  180
RRESSSGASG SSDSGSTSPR GDGGGGGGDR TGGGGRRRDS SGRDSGSDNS GGSEQCWFVD  240
GAREEQPGWG FGGLQQHAGG GYHPQMMPAH PSANPNPTNN SSSPSATGAG GLGARHVGAT  300
SSAGPSGGAN GNEPDERTKM SDDFRMYEFK VRRCSRTRAH DWTECPFTHP GEKARRRDPR  360
RFNYCGAACP EFRKGSCPRS DACEFSHGVF ECWLHPSRYR TQLCKDGSAC GRRACFFAHH  420
SSQLRPATDA FGNPLTSQRG AADGGGGLAG PRNSMDGMSG GHGGYESPPQ TCPGSNARTP  480
RQSHDGGHGA GAGAAAAAAA QSSDAFAAAV NAAAAALLGG AGYLPPYATP SNGTPLNPNM  540
VHNAQHSPPA HELHAKYPRR TSVDALNGNM SKLGFGENGG PNHPSSKMHD SGGGGAPWGA  600
QSQQQQAYAM MQQQQQQQQQ SSSSSSSQQQ QQHQQPPRPD AYWRGPGGAT AANAANDGAS  660
LALLSNGVPN GVDPLANAAM LQRQQRTQRR RFSMDVPPTR SPELRGGLRF SAGGGGGPDF  720
RFGAAPVSAA VGADGATAAN GSASQPLMNA VNAKGWYPNQ NGNLLSLNGN GNGNGHHPGV  780
SLAPFVGGRG SQSLDIPRAS SFQHLGMIEG VLGDESGKGG M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064640.10.0predicted protein
TrEMBLC1N9M90.0C1N9M9_MICPC; Predicted protein
STRINGXP_003064640.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-56C3H family protein