PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 190013
Common NameMICPUCDRAFT_52189
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 410aa    MW: 43548.3 Da    PI: 6.7799
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
190013genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019285308223
              EET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
               C    Cgk+F +   L+rH+ tH
   190013 285 ACDepGCGKTFHSVAKLRRHQLTH 308
              688889****************99 PP
2zf-C2H210.90.0015313337123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              y+C+   C+k+F +   LkrH  +H
   190013 313 YRCSlpGCDKRFLDFAKLKRHWFSH 337
              99*******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-7277323No hitNo description
Gene3DG3DSA:3.30.160.607.9E-8280308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7E-4284308IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429284308IPR007087Zinc finger, C2H2
PROSITE patternPS000280286308IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-7309333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0061313337IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408313342IPR007087Zinc finger, C2H2
PROSITE patternPS000280315337IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-5334366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.5345370IPR015880Zinc finger, C2H2-like
SMARTSM00355250381401IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MTDVVIVATA EDAAAGLGFI RTSRGVLRCM RCHTCRNPGL KKRCVNAPAL DDAGGSVGGG  60
IGDDARARAH AAAAPKSTKP RGGGNAAWAW QREDDGSWRR AAALAEEETA PPPSAEKSEN  120
PRTPSAADEP EPAARADAGA GEEEDAEDAE EKPVPDERPV VLLFTTPSGR ANLGELPLVD  180
ALTHPDATCC APDHRSSYLG GARGGGDLLR LVHATAQSLT RKRPFAFTAG LGLDGDDDRV  240
AGGVMNQTRK TAAFSAAADD GSRLPGPGDG AAAEREIYEG EGAHACDEPG CGKTFHSVAK  300
LRRHQLTHGD RAYRCSLPGC DKRFLDFAKL KRHWFSHEGA DARPHLCPHP ECGHAAANRE  360
QWRDHQLEAH ADAERKPRAG FLCVYAGCGK RSGALERHEE HVRSCVYKY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062620.10.0predicted protein
TrEMBLC1N3I70.0C1N3I7_MICPC; Predicted protein
STRINGXP_003062620.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1526722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.28e-18C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]