PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 18196
Common NameSELMODRAFT_108871
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 104aa    MW: 12415.1 Da    PI: 5.9933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
18196genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-201568356
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              k+++++ eq+++Le+ Fe ++++  +++ +LAk+lgL+ rqV vWFqNrRa++k
     18196 15 KKRRLSVEQVKALEKNFEIENKLEPDRKIQLAKELGLQPRQVAVWFQNRRARWK 68
              456899***********************************************9 PP
2HD-ZIP_I/II131.43.5e-4214104191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrls eqvk+LE++Fe e+kLep+rK +la+eLglqprqvavWFqnrRAR+ktkqlEkdy+ Lk++yd lk++   L ke ++L++e+
        18196  14 EKKRRLSVEQVKALEKNFEIENKLEPDRKIQLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYDLLKSEYDDLKASYVDLAKERDKLQAEV 104
                  69*************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.5561070IPR001356Homeobox domain
SuperFamilySSF466891.88E-201072IPR009057Homeodomain-like
SMARTSM003893.6E-181374IPR001356Homeobox domain
CDDcd000863.66E-151571No hitNo description
PfamPF000463.0E-171568IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-221777IPR009057Homeodomain-like
PRINTSPR000311.6E-64150IPR000047Helix-turn-helix motif
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
PRINTSPR000311.6E-65066IPR000047Helix-turn-helix motif
PfamPF021835.0E-1170104IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
DDDLCDESIA QHVEKKRRLS VEQVKALEKN FEIENKLEPD RKIQLAKELG LQPRQVAVWF  60
QNRRARWKTK QLEKDYDLLK SEYDDLKASY VDLAKERDKL QAEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970538.27e-67homeobox-leucine zipper protein HAT5
RefseqXP_002978617.26e-67homeobox-leucine zipper protein HAT5
RefseqXP_024531166.17e-67homeobox-leucine zipper protein HAT5
RefseqXP_024539277.16e-67homeobox-leucine zipper protein HAT5
SwissprotQ022835e-41HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLD8RGY16e-67D8RGY1_SELML; Uncharacterized protein (Fragment)
TrEMBLD8S5J18e-67D8S5J1_SELML; Uncharacterized protein
STRINGEFJ206031e-67(Selaginella moellendorffii)
STRINGEFJ286681e-67(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-43homeobox 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]