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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 16547 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 370aa MW: 38983.1 Da PI: 9.8036 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00024 | 144 | 169 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++C+ C ks+ + s+L H r H
16547 144 FVCGigGCEKSYGSASSLCAHKRArH 169
89********************9888 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:3.30.160.60 | 6.9E-6 | 141 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.325 | 144 | 174 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 146 | 169 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 370 aa Download sequence Send to blast |
MDEAKGATAT ARGSATRAAS ARETAVRTPM IREARRRATT RTRTREGGEG GRGAREDGLK 60 FKVGGDDETR STRGASASAS GGAREAVVVG MRLDALFDAA ADRETRDSEA ATRADDLTAF 120 AAAMTPRARE RAPRRALAVY EKTFVCGIGG CEKSYGSASS LCAHKRARHP GWREAATATK 180 ATTIKKEDDE DVIDGAGDAG DAVDDDGNVF DDASMRLARK RGASGLNDAN RASALGAYFE 240 IVAADAHGRL SSANRTKRRL VRLSKDAGAC ANDPSEPAER RAAAAAAARV FATVEESVDG 300 EQERASAWLH TLDDASRAVS KTQTSSSIID ARALDPDARS HAPELVRACV RHRIARVLRR 360 AFVQAASPA* |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP000588 | 0.0 | CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_001419200.1 | 0.0 | predicted protein | ||||
| TrEMBL | A4S1S8 | 0.0 | A4S1S8_OSTLU; Uncharacterized protein | ||||
| STRING | ABO97493 | 0.0 | (Ostreococcus 'lucimarinus') | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Chlorophytae | OGCP9305 | 2 | 2 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 16547 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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