PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 16039
Common NameSELMODRAFT_16039
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 169aa    MW: 18858.6 Da    PI: 10.2473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
16039genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-131153855
           HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
    HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
            Er+RR+++N+++  Lr ++Pk +      K++Ka+i+  A++Y+++Lq
  16039 11 SERKRRKKLNERLYSLRAIVPKiS------KMDKASIVADAIDYVQELQ 53
           6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-15958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-171068IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-111057No hitNo description
PfamPF000101.4E-101153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
AAGSASKNLV SERKRRKKLN ERLYSLRAIV PKISKMDKAS IVADAIDYVQ ELQGKVQELQ  60
EDVSSLEAAE RREVELGSLF HRRRPALRQA AQPRLPQSSR GSSLSFVSIY KFVLLQLEVS  120
KLEEQVFYLR INCGNSDGVL IQLAKAFESI GLEFSSASLS SFQGKIINS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1411561257Transcription factor MYC2
5gnj_B2e-1411561257Transcription factor MYC2
5gnj_E2e-1411561257Transcription factor MYC2
5gnj_F2e-1411561257Transcription factor MYC2
5gnj_G2e-1411561257Transcription factor MYC2
5gnj_I2e-1411561257Transcription factor MYC2
5gnj_M2e-1411561257Transcription factor MYC2
5gnj_N2e-1411561257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11118ERKRRKKL
28188RRRPALRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024534411.14e-80transcription factor ABORTED MICROSPORES
TrEMBLD8RRH41e-115D8RRH4_SELML; Uncharacterized protein (Fragment)
STRINGEFJ252431e-116(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.36e-27bHLH family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]