PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 159366
Common NameSELMODRAFT_159366, SmKN2-1
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HB-other
Protein Properties Length: 414aa    MW: 45276.3 Da    PI: 5.8477
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
159366genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.1e-103443911054
               HHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  10 eqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               + +e L e  e   k +yps++e++ LA+ +gL+++q+ +WF N+R +
    159366 344 HSTEKLYEWWEahiKWPYPSEQEKANLATDTGLDQKQINNWFINQRKR 391
               55555555555333679*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-5153202IPR005540KNOX1
PfamPF037908.6E-18154198IPR005540KNOX1
SMARTSM012560.0031207258IPR005541KNOX2
PfamPF037914.6E-16210256IPR005541KNOX2
PROSITE profilePS512138.748312332IPR005539ELK domain
PROSITE profilePS5007112.681332395IPR001356Homeobox domain
SuperFamilySSF466899.84E-18334397IPR009057Homeodomain-like
SMARTSM003895.2E-12334399IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-27337396IPR009057Homeodomain-like
CDDcd000862.53E-12344396No hitNo description
PfamPF059201.4E-17352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEPMDRHSSP KRSPGRDGHS PFGAHPTPEQ HDAFLAASSA LISQACVKED PEPQQQHHLI  60
DHGAAAAAAM EHLAWDNHSF IESMSPESAD LCKHLLEHIH GAHFSHGEGS RHDPEEQQPH  120
HHHGGASSSS SGARLAPPPG SMASSISTTE TDETMKASIV AHAHYPDLLA SLLNIQKVLL  180
AQVGAPPDRV AKLDEAGQLL LNLRPAVVTS VGANPELDDF MVAYCAIMKE FEDEFRNVLE  240
GAMAFCKTKT DQLGAIAAAS IHMNSVVTSV SDHPVESEEP ETTTTGGGAE IEEDISSSEV  300
GNEVDPLAKD ENLKEYLAQR YGAYIKGLKQ EFLKKKKKGK LPKHSTEKLY EWWEAHIKWP  360
YPSEQEKANL ATDTGLDQKQ INNWFINQRK RHWNPSEHDR PLSSVSARGN TEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002988325.10.0homeobox protein knotted-1-like 10 isoform X1
TrEMBLD8SY740.0D8SY74_SELML; KNOX transcription factor
STRINGEFJ107440.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.18e-49KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]