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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 157928 | ||||||||
Common Name | SELMODRAFT_157928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | C3H | ||||||||
Protein Properties | Length: 321aa MW: 34472.8 Da PI: 4.7261 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 2 | 16 | 11 | 26 |
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 + G C++G++C+F H+ 157928 2 K-GDCNRGSQCNFLHS 16 5.9************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.15 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 2.7E-43 | 22 | 311 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 0.0021 | 22 | 58 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.5E-44 | 23 | 312 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 0.0029 | 27 | 58 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 21.094 | 29 | 228 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.182 | 29 | 67 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 45 | 59 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 9.4E-6 | 45 | 59 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.32 | 98 | 135 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.16 | 142 | 179 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.061 | 149 | 179 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.645 | 149 | 188 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 166 | 180 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 9.4E-6 | 166 | 180 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.9E-4 | 182 | 219 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0038 | 184 | 218 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 9.4E-6 | 206 | 220 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 86 | 224 | 271 | IPR001680 | WD40 repeat |
SMART | SM00320 | 67 | 274 | 311 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MKGDCNRGSQ CNFLHSYSTT TEMEMMTQLT GHTKAVKGIA LSSSLYTGGQ DKSVKVWNSD 60 DGKCTTTVPM GSEVESLLIA SGWLFVGLPN EVRAWNMQTN AQQSLDGPKG QVYALAVCED 120 ALFAGSQDGS ILAWKYNTAV NAFQPAYGLY GHAGAVVTLQ AAGGRLYSGS TDKSIRVWNI 180 ATRECLFTLH GHSNVVMSLL CWEQFLLSCS LDGYIKVWAA TPSGLEVTYT YPEDDQGDEL 240 DGALALCGTV DAQGKPVLLC SYNDNTVRLY DLPTFNERGV LFSRDEVRVL QGGPGGLVFS 300 GESSGDVKVW CWTKAISSTG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 1e-20 | 24 | 310 | 6 | 320 | Tako8 |
6g6n_A | 1e-20 | 24 | 310 | 6 | 320 | Tako8 |
6g6n_B | 1e-20 | 24 | 310 | 6 | 320 | Tako8 |
6g6n_C | 1e-20 | 24 | 310 | 6 | 320 | Tako8 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002986293.2 | 0.0 | zinc finger CCCH domain-containing protein 17 | ||||
Swissprot | Q0DYP5 | 1e-120 | C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | D8SSK2 | 0.0 | D8SSK2_SELML; Uncharacterized protein | ||||
STRING | EFJ12502 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1065 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-119 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 157928 |
Entrez Gene | 9648712 |
Publications ? help Back to Top | |||
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