PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

15538

Organism

Ostreococcus lucimarinus

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 128aa MW: 14449.9 Da PI: 10.47

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
15538	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.3	4e-11	8	57	3	52
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 k+t++ ++ + +Le+++++++yp+ + +e + ++L+ +++ +WFq rR 15538 8 KKTRLGSSNVATLEKVYAMTQYPDDALIESVRQATKLPASKIINWFQERR 57 678889999****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.09	3	63	IPR001356	Homeobox domain
SMART	SM00389	4.2E-7	5	67	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.19E-11	7	58	IPR009057	Homeodomain-like
Pfam	PF00046	8.2E-9	8	57	IPR001356	Homeobox domain
CDD	cd00086	1.31E-8	8	58	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.5E-11	9	58	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MPAYKSYKKT RLGSSNVATL EKVYAMTQYP DDALIESVRQ ATKLPASKII NWFQERRRGA 60 SPSAMRRDRD VVNRQVDRRG TTGGYSYTRR DERDEGRGLR RGDARDEYGG GGGERRGRDD 120 ASDWSPN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000585	0.0	CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001417834.1	1e-86	predicted protein
TrEMBL	A4RXY3	2e-85	A4RXY3_OSTLU; Uncharacterized protein
STRING	ABO96127	4e-86	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7109	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	2e-08	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	15538