PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 130409
Common NameSELMODRAFT_130409, SELMODRAFT_134056
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Trihelix
Protein Properties Length: 393aa    MW: 43433 Da    PI: 9.9607
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
130409genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.67.9e-1420108186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W++  + aL++a++e+  +l++g+l++++W+evs+ +    + ++  ++ +qCk+k ++l+kr+k +++++++    ++s++p+f+++e
    130409  20 EWSDTAICALLDAYTEKFLQLNKGNLRGKHWQEVSNMVsmrcQGQKSMKTIEQCKNKVDSLKKRHKVERTRMENT-GSTTSQWPWFSKVE 108
               5**********************************9988766677778999*******************99985.666779****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1718110No hitNo description
Gene3DG3DSA:3.40.1160.103.0E-72151385IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B35.6158386IPR015963Uridylate kinase, bacteria
SuperFamilySSF536337.33E-57158385IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.30E-98161386No hitNo description
PfamPF006963.1E-22162365IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MQQQQQQHGQ VDSFKKDREE WSDTAICALL DAYTEKFLQL NKGNLRGKHW QEVSNMVSMR  60
CQGQKSMKTI EQCKNKVDSL KKRHKVERTR MENTGSTTSQ WPWFSKVEQI VGSAPKLSVL  120
LEDDTSMVIK PDKQKGAMRQ RRPNCSLGFH TKTKILQPRW QRVLLKVSGD ALAGDRVQNV  180
DQKITLLVAK EVASAMRLGV EVAVVVGGGN FFRGANWVGT SGLDRASADH IGMMATMMNA  240
VILQASFESV GIKARIQTSY TMTQVAEPFS SKKAIRHLEK GRVVIFGGGT GNPYFTTDTA  300
AAIRAAELKA EIILKAANID GVFDCDSNFL EHVSFRELAM KGLSALDAEA MSHCERHNIP  360
VMLFNISEPG NVVKALTGER VGTLIDQTGK FV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-651603859239Uridylate kinase
3ek5_B1e-651603859239Uridylate kinase
3ek5_C1e-651603859239Uridylate kinase
3ek5_D1e-651603859239Uridylate kinase
3ek5_E1e-651603859239Uridylate kinase
3ek5_F1e-651603859239Uridylate kinase
3ek6_A1e-651603859239Uridylate kinase
3ek6_B1e-651603859239Uridylate kinase
3ek6_C1e-651603859239Uridylate kinase
3ek6_D1e-651603859239Uridylate kinase
3ek6_E1e-651603859239Uridylate kinase
3ek6_F1e-651603859239Uridylate kinase
3nwy_A3e-6516038550279Uridylate kinase
3nwy_B3e-6516038550279Uridylate kinase
3nwy_C3e-6516038550279Uridylate kinase
3nwy_D3e-6516038550279Uridylate kinase
3nwy_E3e-6516038550279Uridylate kinase
3nwy_F3e-6516038550279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024519269.10.0uncharacterized protein LOC9638088
RefseqXP_024521281.10.0uncharacterized protein LOC9633437
TrEMBLD8T2D70.0D8T2D7_SELML; Uncharacterized protein
STRINGEFJ071330.0(Selaginella moellendorffii)
STRINGEFJ092460.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-118Trihelix family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]