PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

119524

Organism

Ostreococcus lucimarinus

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 122aa MW: 14052.3 Da PI: 10.0893

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
119524	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.1	4.1e-24	6	50	8	52
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +s+y l+i+dAAkeLg+++T+LK++CRqyGI+RWPhR++ksl 119524 6 QLISMYAVLKIEDAAKELGMGTTALKKRCRQYGIHRWPHRQLKSL 50 6799***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.392	1	70	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-18	8	50	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MTSKQQLISM YAVLKIEDAA KELGMGTTAL KKRCRQYGIH RWPHRQLKSL DNLIDALEKL 60 TDDSTGDSTD ASCIETAIMQ LKYHRQRIAK DPCYKIPQSV FRLRQAQFKD KHRRTKEVNC 120 V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000582	8e-63	CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001416406.1	1e-86	RWP-RK domain-containing protein
TrEMBL	A4RSZ7	2e-85	A4RSZ7_OSTLU; RWP-RK domain-containing protein
STRING	ABO94699	4e-86	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-20	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	119524