PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 113469
Common NameMICPUN_113469, SDP1
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 520aa    MW: 57100.6 Da    PI: 8.3462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
113469genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-10421470248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                      ++W  eE e lv++v+q Ggg W+ I + +g    ++Rt+ ++k++w+++l
           113469 421 NPWALEEAEALVEGVAQCGGGKWADIKK-LGfpaiEHRTAVDLKDKWRNLL 470
                      68***********************966.5557****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.315415474IPR017930Myb domain
SuperFamilySSF466891.44E-15417494IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-13417471IPR009057Homeodomain-like
SMARTSM007172.1E-6419472IPR001005SANT/Myb domain
PfamPF002495.2E-7421470IPR001005SANT/Myb domain
CDDcd116602.45E-20422471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDMAAARLEA SFLAPDLHGA SGEILHNSGD EENERKSLLH QTQAYDQMLM DMETNMHKSS  60
HSSETQCDCG SVEYKQALDL HPPNAPIIRS RGEYPPQNSV HTLKGEFSSF DGGLNFIGED  120
DGDDLLCDFA PNALQEDGSV GLIADDGSLV KPSFSQTSHW NMCQTSPAGH QRTSTLSCAR  180
FAASQQFQGF AKIGYDGVEE PCLSDSWHSK NQPVAQVHPA GPADSSDSSI TALRQRYHKV  240
FGKETSSNNR QWLLRRLAEI NTFGEVDNCE ERKKLHGQDI LVATAKLSRV SAIETSEYVR  300
VTHRLKLTRK EQEKYLKLVE TNTVEHSARQ AKSMWKGTNI HKRGRGDNES HSLGGGLAKT  360
DGSSAGKRIK KGNNSDSDSA GEPPVKSRNN SSAGGNCKAT QARKTLDTNI GGNGRRSKHH  420
NPWALEEAEA LVEGVAQCGG GKWADIKKLG FPAIEHRTAV DLKDKWRNLL RIAMLPHQPV  480
KNAGDKKREI PPELLARVRE LAAKHAKKQT QDGRNRHGR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015740.0CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507108.10.0myb family transcription factor
TrEMBLC1FDC40.0C1FDC4_MICCC; Myb family transcription factor
STRINGXP_002507108.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-16TRF-like 6
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]